PAPERS FROM 2008
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| Saunak Sen, Frank Johannes, and Karl W. Broman (July 28, 2008) Selective Genotyping and Phenotyping Strategies in a Complex Trait Context |
| Mark R. Segal (July 1, 2008) Re-Cracking the Nucleosome Positioning Code |
| Mark R. Segal (June 1, 2008) On E-values for Tandem MS Scoring Schemes |
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PAPERS FROM 2007
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| Yuanyuan Xiao, Mark R. Segal, Jean YH Yang, and Ru-Fang Yeh (April 25, 2007) A multi-array multi-SNP genotyping algorithm for Affymetrix SNP microarrays |
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PAPERS FROM 2006
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| Mark R. Segal (December 1, 2006) Validation in Genomics: CpG Island Methylation Revisited |
| Saunak Sen, Jaya Satagopan, Karl W. Broman, and Gary A. Churchill (November 1, 2006) R/qtlDesign: Inbred Line Cross Experimental Design |
| Mark R. Segal (August 28, 2006) Chess, Chance and Conspiracy |
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PAPERS FROM 2005
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| Yuanyuan Xiao and Mark R. Segal (September 16, 2005) Prediction of Genomewide Conserved Epitope Profiles of HIV-1: Classifier Choice and Peptide Representation |
| Saunak Sen (July 15, 2005) Cluster Computing: When Many Hands Make Light Work |
| Yuanyuan Xiao, Yee Hwa Yang, Todd A. Burckin, Lily Shiue, Grant A. Hartzog, and Mark R. Segal (March 1, 2005) Analysis of a Splice Array Experiment Elucidates Roles of Chromatin Elongation Factor Spt4-5 in Splicing |
| Saunak Sen, Jaya Satagopan, and Gary A. Churchill (February 2, 2005) QTL Study Design from an Information Perspective |
| Mark R. Segal (January 25, 2005) Microarray Gene Expression Data with Linked Survival Phenotypes: Diffuse Large-B-Cell Lymphoma Revisited |
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PAPERS FROM 2004
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| Fangxin Hong and Hongzhe Li (November 10, 2004) Functional Empirical Bayes Methods for Identifying Genes with Different Time-course Expression Profiles |
| Yuanyuan Xiao, Mark R. Segal, and Yee Hwa Yang (November 5, 2004) Stepwise Normalization of Two-Channel Spotted Microarrays |
| Yee Hwa Yang, Yuanyuan Xiao, and Mark R. Segal (July 2, 2004) Identifying differentially expressed genes from microarray experiments via statistic synthesis |
| Mark R. Segal (April 14, 2004) Machine Learning Benchmarks and Random Forest Regression |
| Hongzhe Li and Jiang Gui (March 1, 2004) Partial Cox Regression Analysis for High-Dimensional Microarray Gene Expression Data |
| Jiang Gui and Hongzhe Li (March 1, 2004) Penalized Cox Regression Analysis in the High-Dimensional and Low-sample Size Settings, with Applications to Mi-croarray Gene Expression Data |
| Mark R. Segal, Jason D. Barbour, and Robert M. Grant (March 1, 2004) Relating HIV-1 Sequence Variation to Replication Capacity via Trees and Forests |
| Lexin Li and Hongzhe Li (February 1, 2004) Dimension Reduction Methods for Microarrays with Application to Censored Survival Data |
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PAPERS FROM 2003
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| Chun Zhang, Kun Chen, Michael F. Seldin, and Hongzhe Li (December 1, 2003) A Hidden Markov Modeling Approach for Admixture Mapping Based on Case-Control Haplotype Data |
| Wanlong Sun and Hongzhe Li (December 1, 2003) Ascertainment-Adjusted Maximum Likelihood Estimation for the Additive Genetic Gamma Frailty Model |
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PAPERS FROM 2002
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| Ru-Fang Yeh, Terence P. Speed, Michael S. Waterman, and Xiaoman Li (October 11, 2002) Predicting Progress in Shotgun Sequencing with Paired Ends |
| Mark R. Segal, Kam D. Dahlquist, and Bruce R. Conklin (August 1, 2002) Regression Approaches for Microarray Data Analysis |
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PAPERS FROM 2001
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| Mark R. Segal and Joseph L. Wiemels (June 1, 2001) Clustering of translocation breakpoints |
| Saunak Sen (June 1, 2001) A note on the mating scheme used by the Mutagenesis Project |
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PAPERS FROM 2000
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| Mark R. Segal, Michael P. Cummings, and Alan E. Hubbard (December 1, 2000) Relating amino acid sequence to phenotype: Analysis of peptide binding data |
| Saunak Sen and Kevin Seburn (June 1, 2000) An algorithm for detecting phenotypic mutants for the JAX neuroscience mutagenesis facility |
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