eScholarship Repository eScholarship Repository California Digital Library
eScholarship > LBNL > Paper LBNL-57898

LBNL Papers

LBNL Website

Policies

Search LBNL

Submit a Paper

Notify me of new papers

institute_logo

Lawrence Berkeley National Laboratory
University of California

LBNL Papers  •  LBNL Website  •  Policies  •  Search LBNL  •  Submit a Paper

Unusual Gene Order and Organization of the Sea Urchin Hox Cluster
Paul M. Richardson
Susan Lucas
R. Andrew Cameron
Lee Rowen
Ryan Nesbitt
Scott Bloom
Jonathan P. Rast
Kevin Berney
Cesar Arenas-Mena
Pedro Martinez
Eric H. Davidson
Kevin J. Peterson
Leroy Hood

Download the Paper (1.8 MB, PDF file) - May 10, 2005 Tell a colleague about it.
Printing Tips: Select 'print as image' in the Acrobat print dialog if you have trouble printing.

ABSTRACT:

The highly consistent gene order and axial colinear expression patterns found in vertebrate hox gene clusters are less well conserved across the rest of bilaterians. We report the first deuterostome instance of an intact hox cluster with a unique gene order where the paralog groups are not expressed in a sequential manner. The finished sequence from BAC clones from the genome of the sea urchin, Strongylocentrotus purpuratus, reveals a gene order wherein the anterior genes (Hox1, Hox2 and Hox3) lie nearest the posterior genes in the cluster such that the most 3' gene is Hox5. (The gene order is : 5'-Hox1, 2, 3, 11/13c, 11/13b, '11/13a, 9/10, 8, 7, 6, 5 - 3)'. The finished sequence result is corroborated by restriction mapping evidence and BAC-end scaffold analyses. Comparisons with a putative ancestral deuterostome Hox gene cluster suggest that the rearrangements leading to the sea urchin gene order were many and complex.

SUGGESTED CITATION:
Paul M. Richardson, Susan Lucas, R. Andrew Cameron, Lee Rowen, Ryan Nesbitt, Scott Bloom, Jonathan P. Rast, Kevin Berney, Cesar Arenas-Mena, Pedro Martinez, Eric H. Davidson, Kevin J. Peterson, and Leroy Hood, "Unusual Gene Order and Organization of the Sea Urchin Hox Cluster" (May 10, 2005). Lawrence Berkeley National Laboratory. Paper LBNL-57898.
http://repositories.cdlib.org/lbnl/LBNL-57898

 
bar
Open Archives Initiative eScholarship is a service of the California Digital Library bepress